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Anshul Kundaje: Causal Gene Regulation Models Will Require Decades of Work

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Anshul Kundaje@anshulkundaje#1650inAI

Building a causal model of gene regulation is an infinitely harder problem that will take decades of efforts with new data modalities, well thought out experimental designs & active iterative feedback loops between data generation to push models out of zones they struggle in. 4/

Anshul Kundaje@anshulkundaje

Perturbation prediction with well defined goals & scope is a valuable & valid task. Should be solved by hook or by crook - whatever works 3/

3:35 PM · Jun 9, 2026 · 230 Views
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Anshul Kundaje@anshulkundaje

Perturbation prediction with well defined goals & scope is a valuable & valid task. Should be solved by hook or by crook - whatever works 3/

Anshul Kundaje@anshulkundaje

Also will once again iterate that one can develop simple approaches that can predict perturbations that are in distribution very well without ever learning a causal model of gene regulation. 2/

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Anshul Kundaje@anshulkundaje

The earlier we come to this conclusion the more productive our paths will be. It's great to see some realignment & recalibration of tasks, goals & critical thinking. 5/

Anshul Kundaje@anshulkundaje

Building a causal model of gene regulation is an infinitely harder problem that will take decades of efforts with new data modalities, well thought out experimental designs & active iterative feedback loops between data generation to push models out of zones they struggle in. 4/

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